Assembly Statistics

Assembly build: Mt4.0
Optical Map build: v2

Chr. Real Bases
(Mb)
NNN bases
(Mb)
Total Bases
(Mb)
Percent Real Percent OM
aligned
1 50.28 2.72 52.99 94.40% 86.90%
2 43.69 2.04 45.73 95.50% 84.30%
3 52.39 3.13 55.52 94.40% 83.80%
4 54.53 2.05 56.58 96.40% 89.60%
5 43.38 0.25 43.63 99.40% 92.60%
6 31.99 3.28 35.28 90.70% 79.30%
7 46.51 2.66 49.17 94.60% 85.40%
8 43.18 2.39 45.57 94.80% 81.90%
Chr Total 366 MB 18 Mb 384 Mb 95.20% 85.70%
Unplaced 24 MB 4 Mb 28 Mb 84.80% -

*Click on a Chromosome number to go directly to Genome Browser.

Assembly Structure: Scaffolds and Gaps

The structure of the pseudomolecules is described by AGP files (A or Accessioned Golden Path) which defines the sequence components and their order down each chromosome. The official pseudomolecule release (here and in GenBank) uses a fixed number of N's (100) for each gap between scaffolds. Whe have also used the optical map to estimate the actual size of each gap. Both AGP files can be found on our ftp site. You can also see the actual size of each gap by mousing over the glyph in JBrowse.

 
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